Tool name | CRISP |
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URL | http://www.stsiweb.org/index.php/infrastructure/software_data/variant_detection_for_pooled_sequence_data_crisp/ |
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Important features | 1. It is used for the identification of Single Nucleotide Polymorphisms (SNPs) from pooled sequencing.
2. It identifies both rare and common variants. |
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Citations | Bansal V. A statistical method for the detection of variants from
next-generation resequencing of DNA pools. Bioinformatics. 2010 Jun 15;26(12):i318-24. PubMed PMID: 20529923; PubMed Central PMCID: PMC2881398. |
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Year of publication | 2010 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | SNP discovery, Indel discovery |
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Category | Free, Downloadable |
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License | |
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Status | |
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Input file format | SAM |
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Output file format | VCF |
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Operating system | |
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Operating language | Python |
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Platform | Illumina/Solexa |
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Maintained by | Matthias Haimel, Ensembl Genomes team
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Downloadable file format | |
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Submission file format | |
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